MyoTYPE
Fibre Type Deconvolution
Myotype
MyoTYPE performs fibre-type deconvolution of whole muscle samples where DNAm profiles are known as measured by the Illumina arrays. Upload a CSV of filtered and processed beta values for whole muscle samples with rownames as probeIDs and samples as columns, select the correct Illumina array and run MyoTYPE. A table of estimated fibre-type proportions of samples will be returned, and can be downloaded.
Before upload filter the beta-value dataframe using the following probeIDs.
Epicv2
- cg20488341_TC21
- cg22460923_BC21
- cg03937290_TC21
- cg16209421_TC21
- cg09993645_BC21
- cg11418783_BC21
- cg13435855_BC21
- cg13048191_BC21
- cg20662104_RC21
- cg01808320_BC21
- cg01671575_BC21
- cg22495056_BC21
- cg03406283_TC21
- cg15155209_TC21
- cg06441714_BC21
- cg00313533_TC21
- cg15439078_BC21
- cg14529460_BC21
- cg10123201_TC71
- cg10473149_BC21
- cg01718380_BC21
- cg02763146_BC21
- cg04344361_TC21
- cg27651665_BC21
- cg09579829_TC21
- cg06455211_TC21
- cg19755714_1021
- cg12542203_1021
- cg18258887_BC21
- cg01712812_BC21
- cg00419354_BC21
- cg19501518_TC21
- cg18378755_TC21
- cg17799456_BC21
- cg21100554_BC21
- cg14659000_TC21
- cg10239881_BC21
- cg15415313_BC21
- cg15057300_BC21
- cg07209719_BC21
- cg08799394_TC21
- cg01667636_TC21
- cg13133304_BC11
- cg05258834_BC21
- cg17313210_BC21
- cg04563870_BC21
- cg19642007_BC21
- cg02556649_BC11
- cg08418649_1021
- cg27412030_TC11
- cg06455375_RC21
- cg01821149_TC21
- cg12036298_TC21
- cg18877271_TC11
- cg14600987_BC21
- cg04062013_TC21
- cg16205293_BC21
- cg02304314_BC21
- cg18075458_BC21
- cg03978573_BC21
- cg16514487_BC21
- cg06570416_BC21
- cg18447962_TC21
- cg13314400_TC11
- cg00100361_TC21
- cg15412604_TC21
- cg23706673_BC21
- cg19609829_GC11
- cg23807570_1021
- cg08001951_MC21
- cg19926753_BC21
- cg76270038_BC21
- cg00533834_BC21
- cg10557930_BC21
- cg13061262_GC21
- cg08240074_TC21
- cg06000173_TC21
- cg18176835_BC21
- cg04578549_BC21
- cg25406657_TC21
- cg21221455_BC21
- cg20491601_BC21
- cg25691442_TC21
- cg13107144_TC21
- cg00557924_TC21
- cg07648215_BC21
- cg08315837_BC21
- cg21704222_BC21
- cg13131270_BC71
- cg26371931_TC21
- cg19387862_TC21
- cg23159950_BC21
- cg19600110_BC21
- cg25001827_BC21
- cg10628683_BC21
- cg15791478_TC21
- cg00783213_BC21
EpicV1
- cg20488341
- cg22460923
- cg03837290
- cg16209421
- cg09993645
- cg11418783
- cg13436855
- cg13048191
- cg20562104
- cg01808320
- cg01671575
- cg22495058
- cg15155209
- cg08441714
- cg00313533
- cg15439078
- cg14529489
- cg10123201
- cg10473149
- cg01718380
- cg02763146
- cg04344361
- cg27651665
- cg09579829
- cg06455211
- cg19755714
- cg12542203
- cg18258887
- cg01712812
- cg00419354
- cg19501518
- cg18378755
- cg17799456
- cg21100554
- cg14659000
- cg10239881
- cg15415313
- cg15057300
- cg07209719
- cg08799394
- cg01667636
- cg13133304
- cg05258834
- cg17313210
- cg04563870
- cg19642007
- cg02556649
- cg08418649
- cg27412030
- cg06455375
- cg01821149
- cg12036298
- cg18877271
- cg14600987
- cg04062013
- cg16205293
- cg02304314
- cg18075458
- cg03978573
- cg16514487
- cg06570416
- cg18447962
- cg13314400
- cg00100361
- cg15412604
- cg23706673
- cg19609829
- cg23807570
- cg08001951
- cg19926753
- cg76270038
- cg00533834
- cg10557930
- cg13061262
- cg08240074
- cg06000173
- cg18176835
- cg04578549
- cg25406657
- cg21221455
- cg20491601
- cg25691442
- cg13107144
- cg00557924
- cg07648215
- cg08315837
- cg21704222
- cg13131270
- cg26371931
- cg19387862
- cg23159950
- cg19600110
- cg25001827
- cg10628683
- cg15791478
- cg00783213
N.B. MyoTYPE has been tested on the EPICv2 and EPICv1 arrays. It is possible to return results if you have a list of probeIDs from the 450K and 27K arrays, however they only use 40 and 3 probes respectively to estimate fibre-type proportions and have not been tested.